class: center, middle, inverse, title-slide .title[ # R in 3 Months: Week 7 (Tidy Data) ] --- # Agenda -- 1. Housekeeping -- 1. Tidy Data -- 1. Exercise -- 1. More Complicated Tidying Examples -- 1. Next Week --- class: inverse, center, middle # Housekeeping ??? Discuss week --- class: inverse, center, middle # Tidy Data --- class: inverse, center, middle # What questions do you have about tidy data? --- ## What is tidy data? > "Tidy datasets are all alike, but every messy dataset is messy in its own way" > > Hadley Wickham -- Tidy data is both a philosophical approach to wrangling data - and a requirement for using parts of the tidyverse. --- ## Defining tidy data From the [tidy data vignette](https://tidyr.tidyverse.org/articles/tidy-data.html#defining): -- 1. Every column is a variable. -- 1. Every row is an observation. -- 1. Every cell is a single value. --- # Tidy data and `ggplot2` `ggplot` needs data in a tidy format. This dataset is the exact opposite of what {ggplot2} needs for a bar chart. <div data-pagedtable="false"> <script data-pagedtable-source type="application/json"> {"columns":[{"label":["carni"],"name":[1],"type":["int"],"align":["right"]},{"label":["herbi"],"name":[2],"type":["int"],"align":["right"]},{"label":["insecti"],"name":[3],"type":["int"],"align":["right"]},{"label":["omni"],"name":[4],"type":["int"],"align":["right"]}],"data":[{"1":"19","2":"32","3":"5","4":"20"}],"options":{"columns":{"min":{},"max":[10]},"rows":{"min":[10],"max":[10]},"pages":{}}} </script> </div> --- ## Tidy data and `ggplot2` The previous dataset is wide. What `ggplot2` needs is long. <div data-pagedtable="false"> <script data-pagedtable-source type="application/json"> {"columns":[{"label":["vore"],"name":[1],"type":["chr"],"align":["left"]},{"label":["n"],"name":[2],"type":["int"],"align":["right"]}],"data":[{"1":"carni","2":"19"},{"1":"herbi","2":"32"},{"1":"insecti","2":"5"},{"1":"omni","2":"20"}],"options":{"columns":{"min":{},"max":[10]},"rows":{"min":[10],"max":[10]},"pages":{}}} </script> </div> --- ## Is this dataset wide or long? `data_mike_week_3` ``` ## # A tibble: 10 × 16 ## Location Sector Year Jan Feb Mar Apr May Jun Jul Aug Sept ## <chr> <chr> <dbl> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> ## 1 Chelsea Comme… 2017 1,00… 895,… 1,03… 655,… 504,… 379,… 320,… 348,… 342,… ## 2 West Spri… Resid… 2016 1,00… 922,… 680,… 481,… 242,… 137,… 120,… 115,… 142,… ## 3 Harwich Total 2013 1,00… 946,… 780,… 501,… 311,… 220,… 199,… 196,… 197,… ## 4 Weston Resid… 2017 1,00… 835,… 840,… 508,… 294,… 183,… 136,… 147,… 154,… ## 5 Shrewsbury Comme… 2019 1,00… 867,… 798,… 519,… 339,… 225,… 203,… 240,… 260,… ## 6 Dartmouth Resid… 2019 1,00… 782,… 723,… 382,… 253,… 129,… 103,… 100,… 119,… ## 7 Sharon Resid… 2014 1,00… 936,… 835,… 427,… 207,… 120,… 99,2… 99,9… 125,… ## 8 Ludlow Total 2015 1,00… 940,… 669,… 138,… 159,… 104,… 98,0… 97,7… 110,… ## 9 Swansea Total 2018 1,00… 732,… 813,… 593,… 255,… 137,… 103,… 101,… 104,… ## 10 Braintree Resid… 2017 1,00… 885,… 814,… 518,… 265,… 157,… 117,… 117,… 130,… ## # … with 4 more variables: Oct <chr>, Nov <chr>, Dec <chr>, Annual <chr> ``` --- ## Is this dataset wide or long? `wakefield_dataset` ``` ## # A tibble: 100 × 4 ## name age gender religion ## <chr> <int> <chr> <chr> ## 1 Chanel 66 Male Buddhist ## 2 Marillyn 68 Male Christian ## 3 Brentleigh 65 Male None ## 4 Nagisa 71 Female Buddhist ## 5 Suave 86 Male None ## 6 Ariss 80 Female Muslim ## 7 Walt 64 Female Hindu ## 8 Hafiz 46 Male Folk ## 9 Marsden 79 Female Folk ## 10 Javale 29 Female Muslim ## # … with 90 more rows ``` --- ## Is this dataset wide or long? `tidycensus` ``` ## # A tibble: 108 × 5 ## GEOID NAME variable estimate moe ## <chr> <chr> <chr> <dbl> <dbl> ## 1 41001 Baker County, Oregon n_in_poverty_under_18 494 204 ## 2 41001 Baker County, Oregon n_in_poverty_male 907 230 ## 3 41001 Baker County, Oregon n_in_poverty_female 1014 222 ## 4 41003 Benton County, Oregon n_in_poverty_under_18 2042 408 ## 5 41003 Benton County, Oregon n_in_poverty_male 8439 587 ## 6 41003 Benton County, Oregon n_in_poverty_female 7880 599 ## 7 41005 Clackamas County, Oregon n_in_poverty_under_18 8002 982 ## 8 41005 Clackamas County, Oregon n_in_poverty_male 14369 1199 ## 9 41005 Clackamas County, Oregon n_in_poverty_female 18234 1139 ## 10 41007 Clatsop County, Oregon n_in_poverty_under_18 573 206 ## # … with 98 more rows ``` --- ## Is this dataset wide or long? `tidycensus v2` ``` ## # A tibble: 36 × 8 ## GEOID NAME n_in_…¹ n_in_…² n_in_…³ n_in_…⁴ n_in_…⁵ n_in_…⁶ ## <chr> <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> ## 1 41039 Lane County, Oregon 29634 1657 34823 1495 13381 1111 ## 2 41067 Washington County, Ore… 23520 1382 28586 1498 15621 1342 ## 3 41007 Clatsop County, Oregon 1818 337 2046 348 573 206 ## 4 41029 Jackson County, Oregon 14802 1097 18432 1335 9317 1040 ## 5 41023 Grant County, Oregon 558 139 725 181 307 109 ## 6 41005 Clackamas County, Oreg… 14369 1199 18234 1139 8002 982 ## 7 41057 Tillamook County, Oreg… 1614 298 1751 307 957 297 ## 8 41033 Josephine County, Oreg… 7488 797 7896 796 4102 644 ## 9 41059 Umatilla County, Oregon 5296 700 7630 917 4991 841 ## 10 41009 Columbia County, Oregon 2497 404 3431 473 1478 440 ## # … with 26 more rows, and abbreviated variable names ¹n_in_poverty_maleE, ## # ²n_in_poverty_maleM, ³n_in_poverty_femaleE, ⁴n_in_poverty_femaleM, ## # ⁵n_in_poverty_under_18E, ⁶n_in_poverty_under_18M ``` --- ## Is this dataset wide or long? `wikipedia_calendars` ``` ## # A tibble: 5 × 6 ## Name Type Group Intro…¹ Usage Comme…² ## <chr> <chr> <chr> <chr> <chr> <chr> ## 1 Vikram samwat Lunisolar Indian Ancien… Indi… The Vi… ## 2 Egyptian calendar fixed (365 days) Egyptian Bronze… Midd… The ye… ## 3 Umma calendar lunisolar Mesopotam… Bronze… Sume… Record… ## 4 Pentecontad calendar solar Mesopotam… Bronze… Amor… A Bron… ## 5 Four Seasons and Eight Nodes solar Chinese Bronze… China The ye… ## # … with abbreviated variable names ¹Introduction, ²Comments ``` --- # `pivot_longer()` ```r your_data %>% pivot_longer(cols = columns_to_pivot, names_to = "name_column_name", values_to = "value_column_name") ``` --- ## `pivot_longer()` ```r relig_income ``` <div data-pagedtable="false"> <script data-pagedtable-source type="application/json"> {"columns":[{"label":["religion"],"name":[1],"type":["chr"],"align":["left"]},{"label":["<$10k"],"name":[2],"type":["dbl"],"align":["right"]},{"label":["$10-20k"],"name":[3],"type":["dbl"],"align":["right"]},{"label":["$20-30k"],"name":[4],"type":["dbl"],"align":["right"]},{"label":["$30-40k"],"name":[5],"type":["dbl"],"align":["right"]},{"label":["$40-50k"],"name":[6],"type":["dbl"],"align":["right"]},{"label":["$50-75k"],"name":[7],"type":["dbl"],"align":["right"]},{"label":["$75-100k"],"name":[8],"type":["dbl"],"align":["right"]},{"label":["$100-150k"],"name":[9],"type":["dbl"],"align":["right"]},{"label":[">150k"],"name":[10],"type":["dbl"],"align":["right"]},{"label":["Don't know/refused"],"name":[11],"type":["dbl"],"align":["right"]}],"data":[{"1":"Agnostic","2":"27","3":"34","4":"60","5":"81","6":"76","7":"137","8":"122","9":"109","10":"84","11":"96"},{"1":"Atheist","2":"12","3":"27","4":"37","5":"52","6":"35","7":"70","8":"73","9":"59","10":"74","11":"76"},{"1":"Buddhist","2":"27","3":"21","4":"30","5":"34","6":"33","7":"58","8":"62","9":"39","10":"53","11":"54"},{"1":"Catholic","2":"418","3":"617","4":"732","5":"670","6":"638","7":"1116","8":"949","9":"792","10":"633","11":"1489"},{"1":"Don’t know/refused","2":"15","3":"14","4":"15","5":"11","6":"10","7":"35","8":"21","9":"17","10":"18","11":"116"},{"1":"Evangelical Prot","2":"575","3":"869","4":"1064","5":"982","6":"881","7":"1486","8":"949","9":"723","10":"414","11":"1529"},{"1":"Hindu","2":"1","3":"9","4":"7","5":"9","6":"11","7":"34","8":"47","9":"48","10":"54","11":"37"},{"1":"Historically Black Prot","2":"228","3":"244","4":"236","5":"238","6":"197","7":"223","8":"131","9":"81","10":"78","11":"339"},{"1":"Jehovah's Witness","2":"20","3":"27","4":"24","5":"24","6":"21","7":"30","8":"15","9":"11","10":"6","11":"37"},{"1":"Jewish","2":"19","3":"19","4":"25","5":"25","6":"30","7":"95","8":"69","9":"87","10":"151","11":"162"},{"1":"Mainline Prot","2":"289","3":"495","4":"619","5":"655","6":"651","7":"1107","8":"939","9":"753","10":"634","11":"1328"},{"1":"Mormon","2":"29","3":"40","4":"48","5":"51","6":"56","7":"112","8":"85","9":"49","10":"42","11":"69"},{"1":"Muslim","2":"6","3":"7","4":"9","5":"10","6":"9","7":"23","8":"16","9":"8","10":"6","11":"22"},{"1":"Orthodox","2":"13","3":"17","4":"23","5":"32","6":"32","7":"47","8":"38","9":"42","10":"46","11":"73"},{"1":"Other Christian","2":"9","3":"7","4":"11","5":"13","6":"13","7":"14","8":"18","9":"14","10":"12","11":"18"},{"1":"Other Faiths","2":"20","3":"33","4":"40","5":"46","6":"49","7":"63","8":"46","9":"40","10":"41","11":"71"},{"1":"Other World Religions","2":"5","3":"2","4":"3","5":"4","6":"2","7":"7","8":"3","9":"4","10":"4","11":"8"},{"1":"Unaffiliated","2":"217","3":"299","4":"374","5":"365","6":"341","7":"528","8":"407","9":"321","10":"258","11":"597"}],"options":{"columns":{"min":{},"max":[10]},"rows":{"min":[10],"max":[10]},"pages":{}}} </script> </div> --- ## `pivot_longer()` ```r relig_income %>% pivot_longer(cols = -religion, names_to = "income_group", values_to = "n") ``` <div data-pagedtable="false"> <script data-pagedtable-source type="application/json"> {"columns":[{"label":["religion"],"name":[1],"type":["chr"],"align":["left"]},{"label":["income_group"],"name":[2],"type":["chr"],"align":["left"]},{"label":["n"],"name":[3],"type":["dbl"],"align":["right"]}],"data":[{"1":"Agnostic","2":"<$10k","3":"27"},{"1":"Agnostic","2":"$10-20k","3":"34"},{"1":"Agnostic","2":"$20-30k","3":"60"},{"1":"Agnostic","2":"$30-40k","3":"81"},{"1":"Agnostic","2":"$40-50k","3":"76"},{"1":"Agnostic","2":"$50-75k","3":"137"},{"1":"Agnostic","2":"$75-100k","3":"122"},{"1":"Agnostic","2":"$100-150k","3":"109"},{"1":"Agnostic","2":">150k","3":"84"},{"1":"Agnostic","2":"Don't 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know/refused","3":"54"},{"1":"Catholic","2":"<$10k","3":"418"},{"1":"Catholic","2":"$10-20k","3":"617"},{"1":"Catholic","2":"$20-30k","3":"732"},{"1":"Catholic","2":"$30-40k","3":"670"},{"1":"Catholic","2":"$40-50k","3":"638"},{"1":"Catholic","2":"$50-75k","3":"1116"},{"1":"Catholic","2":"$75-100k","3":"949"},{"1":"Catholic","2":"$100-150k","3":"792"},{"1":"Catholic","2":">150k","3":"633"},{"1":"Catholic","2":"Don't know/refused","3":"1489"},{"1":"Don’t know/refused","2":"<$10k","3":"15"},{"1":"Don’t know/refused","2":"$10-20k","3":"14"},{"1":"Don’t know/refused","2":"$20-30k","3":"15"},{"1":"Don’t know/refused","2":"$30-40k","3":"11"},{"1":"Don’t know/refused","2":"$40-50k","3":"10"},{"1":"Don’t know/refused","2":"$50-75k","3":"35"},{"1":"Don’t know/refused","2":"$75-100k","3":"21"},{"1":"Don’t know/refused","2":"$100-150k","3":"17"},{"1":"Don’t know/refused","2":">150k","3":"18"},{"1":"Don’t know/refused","2":"Don't know/refused","3":"116"},{"1":"Evangelical 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Prot","2":"$20-30k","3":"236"},{"1":"Historically Black Prot","2":"$30-40k","3":"238"},{"1":"Historically Black Prot","2":"$40-50k","3":"197"},{"1":"Historically Black Prot","2":"$50-75k","3":"223"},{"1":"Historically Black Prot","2":"$75-100k","3":"131"},{"1":"Historically Black Prot","2":"$100-150k","3":"81"},{"1":"Historically Black Prot","2":">150k","3":"78"},{"1":"Historically Black Prot","2":"Don't know/refused","3":"339"},{"1":"Jehovah's Witness","2":"<$10k","3":"20"},{"1":"Jehovah's Witness","2":"$10-20k","3":"27"},{"1":"Jehovah's Witness","2":"$20-30k","3":"24"},{"1":"Jehovah's Witness","2":"$30-40k","3":"24"},{"1":"Jehovah's Witness","2":"$40-50k","3":"21"},{"1":"Jehovah's Witness","2":"$50-75k","3":"30"},{"1":"Jehovah's Witness","2":"$75-100k","3":"15"},{"1":"Jehovah's Witness","2":"$100-150k","3":"11"},{"1":"Jehovah's Witness","2":">150k","3":"6"},{"1":"Jehovah's Witness","2":"Don't know/refused","3":"37"},{"1":"Jewish","2":"<$10k","3":"19"},{"1":"Jewish","2":"$10-20k","3":"19"},{"1":"Jewish","2":"$20-30k","3":"25"},{"1":"Jewish","2":"$30-40k","3":"25"},{"1":"Jewish","2":"$40-50k","3":"30"},{"1":"Jewish","2":"$50-75k","3":"95"},{"1":"Jewish","2":"$75-100k","3":"69"},{"1":"Jewish","2":"$100-150k","3":"87"},{"1":"Jewish","2":">150k","3":"151"},{"1":"Jewish","2":"Don't know/refused","3":"162"},{"1":"Mainline Prot","2":"<$10k","3":"289"},{"1":"Mainline Prot","2":"$10-20k","3":"495"},{"1":"Mainline Prot","2":"$20-30k","3":"619"},{"1":"Mainline Prot","2":"$30-40k","3":"655"},{"1":"Mainline Prot","2":"$40-50k","3":"651"},{"1":"Mainline Prot","2":"$50-75k","3":"1107"},{"1":"Mainline Prot","2":"$75-100k","3":"939"},{"1":"Mainline Prot","2":"$100-150k","3":"753"},{"1":"Mainline Prot","2":">150k","3":"634"},{"1":"Mainline Prot","2":"Don't 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know/refused","3":"8"},{"1":"Unaffiliated","2":"<$10k","3":"217"},{"1":"Unaffiliated","2":"$10-20k","3":"299"},{"1":"Unaffiliated","2":"$20-30k","3":"374"},{"1":"Unaffiliated","2":"$30-40k","3":"365"},{"1":"Unaffiliated","2":"$40-50k","3":"341"},{"1":"Unaffiliated","2":"$50-75k","3":"528"},{"1":"Unaffiliated","2":"$75-100k","3":"407"},{"1":"Unaffiliated","2":"$100-150k","3":"321"},{"1":"Unaffiliated","2":">150k","3":"258"},{"1":"Unaffiliated","2":"Don't know/refused","3":"597"}],"options":{"columns":{"min":{},"max":[10]},"rows":{"min":[10],"max":[10]},"pages":{}}} </script> </div> --- class: inverse, center, middle # Exercise --- ## Exercise Copy the code from [this gist](https://gist.githubusercontent.com/dgkeyes/1d5ceb8b607266f1d197a218dd5c6882/raw/3591c9dc6e02ee78e3471bc40753cc948456c4d1/tidy-data-exercise.R) into a new R script file. Then tidy the `gapminder_wide` data. --- class: inverse, center, middle # More complicated tidying --- ### pivot_longer(names_sep) It's possible to tell `pivot_longer()` to split column names into two "name" columns. <div data-pagedtable="false"> <script data-pagedtable-source type="application/json"> 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Do you have any ideas? -- - If you're making beautiful tables, you likely want wide data. -- - You can't mix different data types (eg age and religion) -- - Joining datsets with `left_join()` sometimes requires wide data --- # Next Week: Separating columns and multiple choice responses Next week we will talk about survey datasets and separating columns that contain multiple choice (i.e. check all that apply) items. --- ## Next Week -- There are two big topics in the next week: -- 1. Reducing repetitive code with user-defined functions -- 1. Joining together datasets by shared columns (i.e. data merging) -- These skills will equip you to deal with more complex and larger scale data wrangling --- ## Project assignment Use the `pivot_longer()` function to tidy your data and visualise it with {ggplot2} <!-- Example from the video https://gist.github.com/charliejhadley/80e3182e76639022b08b75dfa426ff84 -->